Given that the user region is a copy of the factory region and that there is no way to edit the preset name on device, it is likely that this has affected any default patch or user copy created on device.
Possibly, if your program was based on an affected program. You can check the Q Comp value by holding down the REV button.
I guess I was have been assuming the OS update is what they would need (or want) to do to fix the padding of the original presets. Even if not necessary, just for the sake of consistency in customer communication (i.e. "Grab the latest update" is something their customers are already doing occasionally anyway, whereas the padding issue in the factory patches is kind of an edge case that's a little harder to explain, even if the process for correcting them is easy).
I think the best solution on Sequential's part would be to correct the factory program file at
https://sequential.com/wp-content/uploads/2020/11/Prophet-510-Factory-Programs-ReadMe1.02.zipI don't have any way of knowing if this is a widespread issue. It's important to reiterate, the problem is in the factory preset file,
not the Prophet-5 itself. I don't even know if they use this file for setting up new instruments.
If you have Q Compensation enabled, you can check by going to Factory #115, and holding down the REV button. The display will read RES, and the Q Comp setting will be one of the Program select buttons. In the program in the above file, the third Program button is lit, indicating Q Comp = 2.
If the first Program select button is on instead, then there's no issue on your instrument. But you'll definitely see the issue if you've used that file, or if that file is what they use at the factory.
I'd be interested to know if others see it, particularly if you haven't explicitly run the factory sysex file.