@pym - If possible, it would be awesome if there was a per patch control for timing offset of the internal clock... this is actually something that would be nice to have on all Seq instruments.
For UI: The optimal interface would be a dedicated knob control of course (either a pot with a center indent at middle position, or an encoder).... but for existing instruments with no more free UI real estate, having it available via a menu, or button combo would be fine. On Pro 3, perhaps hold down Track Select and turn the BPM encoder, and it would adjust the timing/phase offset relative to incoming clock signal. So you could shift the timing forward/backward by maybe +/-100 ms, while maintaining the same BPM lock. Some other instruments have this ability. Also, if it's fairly easily accessible via a knob or combo.... or a mod destination, it can be used to humanize and alter sequences in real time.
Some sequences/arps sound better when they are locked onto transient downbeat, while others sound better a few milliseconds ahead of the beat or behind the beat, so having a way to adjust this (and save per patch, optimally) would be really nice option to have.
I have found that I currently don't use arp-beat-sync much, just because its pretty rigid... some sequences sound good with it, but others not so much.