I have this too, on a low-serial unit (sub 1000), which I got new just about when they came out, 2.5 years ago.
It sounds EXACTLY like the sound samples posted earlier in this thread.
I sent it in for repair, the service center in Germany acknowledged the problem, said they replaced "Main PCB PSU Rail instandgesetzt" and tested it.
I got it back this week, it sounds exactly the same
Hopefully the second time around they can fix it, I asked to get it sent back again.
It seems to me like this is a fault on early units from the get-go?
It's unfortunate I didn't use mine for bass so much and missed this for the first 2 years I had it. It's sound annoyed me but I couldn't put my finger on it, and I used my simpler mono synths for pure bass sounds, using the Pro 3 as a leads/other, meaning the issue evaded me...
The shop where I bought mine have a floor unit permanently turned on for customers to play. It is also a very low serial. It has the same problem. I've pointed it out to them 3 months ago when I dropped off mine, they are still keeping the unit on display unfixed...