W07's procedure is good, and will get you in the ballpark. But both an electronic tuner and an oscillator will introduce inaccuracies. Using a decent multimeter will improve your CV calibration.
Use your multimeter to find the voltage of the lowest C of transpose setting 0, which should be close to 0V. Adjust the offset value a little until you get exactly 0.00V.
Now play two octaves up. You're probably close to 2V here, but go to the corresponding output scale value and adjust that until you're at 2.00V. After this step, you'll be really close, maybe as close as you need.
But the scale adjustment will have affected your 0.00V key, so go back and see how close 0.00V is again, and adjust the offset again, if necessary. Once you get 0V and 2V nailed down, proceed up to 3.00V (highest C at 0 transpose).
You'll need to leave Global to choose another transpose setting, but check the -1 setting, and check for negative voltages at various Cs (-1.00V, -2.00V).
On my Pro 3, I had nearly perfect calibration from -4V to 4V after only two passes, but it may require more.
Note that all four of your CV outputs will have different values, so if you want to use them all, you'll have to calibrate them all independently.
Consider writing down your scale and offset settings, in case your Pro 3 gets wiped for some reason.