There must be something wrong with your buffered multiple as that is how you should be distributing pitch * * * What buffered multiple are you using?
It was the buffered multiple in the Mother-32*. But just about everyone on MuffWiggler says to use passive mults anyway, as buffered mults tend to overcompensate. This seemed counter-intuitive to me, but so far my experience is bearing it out.
A passive multiple will alter itself depending on its outputs, there is a series voltage drop so you are not going to be getting 1V/octave coming out of all of the outputs. This voltage drop increases with each output attached.
That was my concern about adding a third oscillator. With two oscillators on the Intellijel Passive Multiple, there's no voltage drop (at least not detectable within .001V by my meter) and tracking is lovely for five octaves.
* Yeah, I was surprised that the Mother-32's mult is buffered, but it is.