I've searched around and haven't found a clear answer;
I wrote code in supercollider to talk to the rev2. Amongst many other things, it can send scala tuning and keyboard mappings to the rev2. Generating an EDO is even easier: just type in a number, the number of octaves you want to divide into that number (e.g. divide 2 octaves in to 13 equal parts), and a frequency you want to map on the a4 note (as a reference frequency), and click the send button. You can replace any of the built-in tunings with anything you like (or restore the factory settings if you've messed up
)
The code is available for free on github:
https://github.com/shimpe/sc-prophet-rev2. You can see some of what it can do in this video:
(unfortunately not the tuning part though - I probably ought to record some demos at some point). It's only tested on linux, but in principle it should also work on other operating systems that support supercollider (which include windows and mac systems).
It's the same code base that I also used to e.g. create the book with rev2 presets that is pinned in the forum.